STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG41404.1Transcriptional regulator, LacI family. (345 aa)    
Predicted Functional Partners:
SCG78409.1
Amino acid adenylation domain-containing protein.
    
 
 0.939
SCG48014.1
Glutamate synthase (NADH) large subunit.
    
 
 0.907
SCG78411.1
Amino acid adenylation domain-containing protein.
    
 
 0.704
SCG34142.1
Condensation domain-containing protein.
    
   0.703
SCG39750.1
Condensation domain-containing protein.
    
   0.703
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
   0.533
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.524
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.524
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.524
SCG41386.1
Glucose / Sorbosone dehydrogenase.
       0.522
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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