STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG41828.1Cellulase/cellobiase CelA1. (472 aa)    
Predicted Functional Partners:
SCG78409.1
Amino acid adenylation domain-containing protein.
  
 
 0.975
SCG78411.1
Amino acid adenylation domain-containing protein.
  
 
 0.940
SCG33995.1
Beta-xylosidase.
  
 0.904
SCG60633.1
Endo-1,4-beta-xylanase.
 
   0.864
SCG62101.1
Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.853
SCG72615.1
Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.853
SCG34142.1
Condensation domain-containing protein.
  
 
 0.834
SCG39750.1
Condensation domain-containing protein.
  
 
 0.834
SCG77203.1
Glycosyl hydrolase family 10.
 
   0.828
SCG57523.1
Glycosyl hydrolase family 10.
 
   0.811
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.