Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCG42052.1F5/8 type C domain-containing protein. (1428 aa)    
Predicted Functional Partners:
SCG42095.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
 
     0.694
SCG42060.1
F5/8 type C domain-containing protein.
 
    
0.662
SCG53143.1
Major Facilitator Superfamily protein.
  
     0.650
SCG68319.1
Carbohydrate binding domain-containing protein.
  
     0.610
SCG63339.1
Intein C-terminal splicing region/intein N-terminal splicing region/RHS repeat-associated core domain-containing protein.
  
     0.580
SCG72582.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.579
SCG71091.1
Predicted arabinose efflux permease, MFS family.
  
     0.578
SCG78466.1
Chitinase, GH18 family; Belongs to the glycosyl hydrolase 18 family.
  
    0.577
SCG64633.1
Hypothetical protein.
  
     0.575
SCG40485.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
     0.571
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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