STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG44897.1Two component transcriptional regulator, LuxR family. (206 aa)    
Predicted Functional Partners:
SCG44888.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
  0.979
SCG64834.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  0.914
SCG44877.1
ABC-2 type transport system permease protein.
 
     0.907
SCG36115.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  0.901
SCG60034.1
Signal transduction histidine kinase.
   
 0.888
SCG44868.1
ABC-2 type transport system ATP-binding protein.
 
     0.873
SCG68283.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  0.846
SCG47399.1
Signal transduction histidine kinase.
  
  0.780
SCG53234.1
Signal transduction histidine kinase.
 
  0.768
SCG37562.1
Signal transduction histidine kinase.
  
  0.765
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.