STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG60270.1Hypothetical protein. (673 aa)    
Predicted Functional Partners:
SCG52352.1
Endoglucanase.
   
 0.981
SCG68438.1
Cellulose binding domain-containing protein.
   
 0.981
SCG79389.1
Endoglucanase.
   
 0.981
SCG60277.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
 
     0.948
SCG73584.1
Cellulose binding domain-containing protein.
   
   0.940
SCG60299.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.935
SCG60291.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.925
SCG60284.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.911
SCG33820.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.836
SCG68095.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
   
  0.836
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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