STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG78884.1Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family. (141 aa)    
Predicted Functional Partners:
SCG78878.1
Hypothetical protein.
 
 
 0.985
SCG78881.1
Protein of unknown function.
 
   
 0.950
SCG74232.1
Signal recognition particle receptor subunit beta, a GTPase.
 
 
 0.937
SCG51768.1
Hypothetical protein.
 
 
 0.932
SCG67044.1
Signal recognition particle receptor subunit beta, a GTPase.
 
 
 0.932
SCG75339.1
Hypothetical protein.
 
 
 0.932
SCG78885.1
Signal transduction histidine kinase.
 
     0.906
SCG74226.1
Protein of unknown function.
 
   
 0.790
SCG51777.1
Protein of unknown function.
 
   
 0.789
SCG67035.1
Protein of unknown function.
 
   
 0.788
Your Current Organism:
Micromonospora humi
NCBI taxonomy Id: 745366
Other names: DSM 45647, JCM 15292, M. humi, Micromonospora humi Songsumanus et al. 2011, Micromonospora sp. P0402, PCU 315, PCU:315, strain P0402
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