STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA75200.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
SKA75195.1
Metallo-beta-lactamase family protein.
       0.773
SKA75197.1
Hypothetical protein.
       0.773
SKA89708.1
CobW/HypB/UreG, nucleotide-binding domain.
  
     0.669
SKA89695.1
Cobalamin synthesis protein cobW C-terminal domain-containing protein.
  
     0.502
SKA92535.1
seryl-tRNA synthetase.
  
     0.480
SKA76369.1
Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
  
     0.450
SKA83514.1
Hypothetical protein.
  
     0.434
SKA92760.1
Hypothetical protein.
  
     0.432
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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