SKA77538.1 protein (Gemmiger formicilis) - STRING interaction network

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Score

SKA77538.1

Uncharacterized protein. (166 aa)

Predicted Functional Partners:

rpmF

0.981

rpsC

0.934

rplK

0.910

rpsP

0.788

rpsB

0.775

rpsF

0.775

infC

0.773

rplU

0.772

rplA

0.769

rplV

0.766

Your Current Organism:

Gemmiger formicilis

NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA77538.1	infC	SAMN02745178_00659	SAMN02745178_00352	Uncharacterized protein.	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.773
SKA77538.1	rplA	SAMN02745178_00659	SAMN02745178_00044	Uncharacterized protein.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.769
SKA77538.1	rplK	SAMN02745178_00659	SAMN02745178_00045	Uncharacterized protein.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.910
SKA77538.1	rplU	SAMN02745178_00659	SAMN02745178_02552	Uncharacterized protein.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.772
SKA77538.1	rplV	SAMN02745178_00659	SAMN02745178_00549	Uncharacterized protein.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.766
SKA77538.1	rpmF	SAMN02745178_00659	SAMN02745178_00660	Uncharacterized protein.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.981
SKA77538.1	rpsB	SAMN02745178_00659	SAMN02745178_01080	Uncharacterized protein.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.775
SKA77538.1	rpsC	SAMN02745178_00659	SAMN02745178_00550	Uncharacterized protein.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.934
SKA77538.1	rpsF	SAMN02745178_00659	SAMN02745178_02542	Uncharacterized protein.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.775
SKA77538.1	rpsP	SAMN02745178_00659	SAMN02745178_01054	Uncharacterized protein.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.788
infC	SKA77538.1	SAMN02745178_00352	SAMN02745178_00659	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Uncharacterized protein.	0.773
infC	rplA	SAMN02745178_00352	SAMN02745178_00044	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.910
infC	rplK	SAMN02745178_00352	SAMN02745178_00045	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.952
infC	rplU	SAMN02745178_00352	SAMN02745178_02552	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.940
infC	rplV	SAMN02745178_00352	SAMN02745178_00549	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.902
infC	rpmF	SAMN02745178_00352	SAMN02745178_00660	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.822
infC	rpsB	SAMN02745178_00352	SAMN02745178_01080	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.974
infC	rpsC	SAMN02745178_00352	SAMN02745178_00550	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.980
infC	rpsF	SAMN02745178_00352	SAMN02745178_02542	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.973
infC	rpsP	SAMN02745178_00352	SAMN02745178_01054	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.946