Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA78605.1 | SKA78610.1 | SAMN02745178_00807 | SAMN02745178_00808 | Stage III sporulation protein AA. | Hypothetical protein. | 0.773 |
SKA78605.1 | SKA78615.1 | SAMN02745178_00807 | SAMN02745178_00809 | Stage III sporulation protein AA. | Stage III sporulation protein AC. | 0.978 |
SKA78605.1 | SKA78620.1 | SAMN02745178_00807 | SAMN02745178_00810 | Stage III sporulation protein AA. | Stage III sporulation protein AD. | 0.959 |
SKA78605.1 | SKA78625.1 | SAMN02745178_00807 | SAMN02745178_00811 | Stage III sporulation protein AA. | Stage III sporulation protein AE (spore_III_AE). | 0.927 |
SKA78605.1 | SKA78643.1 | SAMN02745178_00807 | SAMN02745178_00812 | Stage III sporulation protein AA. | Hypothetical protein. | 0.746 |
SKA78605.1 | SKA78648.1 | SAMN02745178_00807 | SAMN02745178_00813 | Stage III sporulation protein AA. | Stage III sporulation protein AG. | 0.958 |
SKA78605.1 | SKA78655.1 | SAMN02745178_00807 | SAMN02745178_00814 | Stage III sporulation protein AA. | Stage III sporulation protein AH. | 0.929 |
SKA78605.1 | SKA78660.1 | SAMN02745178_00807 | SAMN02745178_00815 | Stage III sporulation protein AA. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.664 |
SKA78605.1 | ligA | SAMN02745178_00807 | SAMN02745178_00806 | Stage III sporulation protein AA. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.519 |
SKA78605.1 | nusB | SAMN02745178_00807 | SAMN02745178_00816 | Stage III sporulation protein AA. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.513 |
SKA78610.1 | SKA78605.1 | SAMN02745178_00808 | SAMN02745178_00807 | Hypothetical protein. | Stage III sporulation protein AA. | 0.773 |
SKA78610.1 | SKA78615.1 | SAMN02745178_00808 | SAMN02745178_00809 | Hypothetical protein. | Stage III sporulation protein AC. | 0.746 |
SKA78610.1 | SKA78620.1 | SAMN02745178_00808 | SAMN02745178_00810 | Hypothetical protein. | Stage III sporulation protein AD. | 0.746 |
SKA78610.1 | SKA78625.1 | SAMN02745178_00808 | SAMN02745178_00811 | Hypothetical protein. | Stage III sporulation protein AE (spore_III_AE). | 0.746 |
SKA78610.1 | SKA78643.1 | SAMN02745178_00808 | SAMN02745178_00812 | Hypothetical protein. | Hypothetical protein. | 0.746 |
SKA78610.1 | SKA78648.1 | SAMN02745178_00808 | SAMN02745178_00813 | Hypothetical protein. | Stage III sporulation protein AG. | 0.746 |
SKA78610.1 | SKA78655.1 | SAMN02745178_00808 | SAMN02745178_00814 | Hypothetical protein. | Stage III sporulation protein AH. | 0.716 |
SKA78610.1 | SKA78660.1 | SAMN02745178_00808 | SAMN02745178_00815 | Hypothetical protein. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.492 |
SKA78610.1 | ligA | SAMN02745178_00808 | SAMN02745178_00806 | Hypothetical protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.519 |
SKA78610.1 | nusB | SAMN02745178_00808 | SAMN02745178_00816 | Hypothetical protein. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.434 |
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