STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA79007.1Rhamnosyltransferase. (647 aa)    
Predicted Functional Partners:
SKA79011.1
dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD+).
 
     0.926
SKA79021.1
Predicted hydrolase, HAD superfamily.
     0.838
SKA79003.1
Rhamnan synthesis protein F.
 
    
0.825
SKA79016.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.742
SKA85731.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
    0.733
SKA75188.1
Ig-like domain (group 2).
  
     0.711
SKA74269.1
Fucose 4-O-acetylase.
  
     0.661
SKA75818.1
SpoIID/LytB domain protein; Belongs to the CinA family.
  
     0.660
SKA79035.1
Protein of unknown function.
       0.657
SKA89612.1
Acetyltransferase (GNAT) family protein.
  
     0.652
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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