Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA74327.1 | SKA75424.1 | SAMN02745178_00311 | SAMN02745178_00425 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase I. | 0.685 |
SKA74327.1 | SKA87858.1 | SAMN02745178_00311 | SAMN02745178_01777 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | ATP-dependent DNA helicase RecQ. | 0.917 |
SKA74327.1 | SKA91000.1 | SAMN02745178_00311 | SAMN02745178_02104 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.862 |
SKA74327.1 | SKA92445.1 | SAMN02745178_00311 | SAMN02745178_02243 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.832 |
SKA74327.1 | mutL | SAMN02745178_00311 | SAMN02745178_00893 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.807 |
SKA74327.1 | recA | SAMN02745178_00311 | SAMN02745178_01589 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.881 |
SKA75424.1 | SKA74327.1 | SAMN02745178_00425 | SAMN02745178_00311 | DNA polymerase I. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.685 |
SKA75424.1 | SKA87858.1 | SAMN02745178_00425 | SAMN02745178_01777 | DNA polymerase I. | ATP-dependent DNA helicase RecQ. | 0.993 |
SKA75424.1 | SKA90743.1 | SAMN02745178_00425 | SAMN02745178_02051 | DNA polymerase I. | Hypothetical protein. | 0.965 |
SKA75424.1 | SKA91000.1 | SAMN02745178_00425 | SAMN02745178_02104 | DNA polymerase I. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.728 |
SKA75424.1 | SKA92445.1 | SAMN02745178_00425 | SAMN02745178_02243 | DNA polymerase I. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.999 |
SKA75424.1 | miaA | SAMN02745178_00425 | SAMN02745178_00892 | DNA polymerase I. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.453 |
SKA75424.1 | mutL | SAMN02745178_00425 | SAMN02745178_00893 | DNA polymerase I. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.997 |
SKA75424.1 | mutS | SAMN02745178_00425 | SAMN02745178_00894 | DNA polymerase I. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.965 |
SKA75424.1 | recA | SAMN02745178_00425 | SAMN02745178_01589 | DNA polymerase I. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.995 |
SKA79100.1 | miaA | SAMN02745178_00891 | SAMN02745178_00892 | Hypothetical protein. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.761 |
SKA79100.1 | mutL | SAMN02745178_00891 | SAMN02745178_00893 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.761 |
SKA79100.1 | mutS | SAMN02745178_00891 | SAMN02745178_00894 | Hypothetical protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.736 |
SKA87858.1 | SKA74327.1 | SAMN02745178_01777 | SAMN02745178_00311 | ATP-dependent DNA helicase RecQ. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.917 |
SKA87858.1 | SKA75424.1 | SAMN02745178_01777 | SAMN02745178_00425 | ATP-dependent DNA helicase RecQ. | DNA polymerase I. | 0.993 |
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