STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA79141.1Protein of unknown function. (235 aa)    
Predicted Functional Partners:
SKA92803.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.838
SKA97473.1
Putative ABC transport system permease protein.
   
 
 0.818
SKA98752.1
Putative ABC transport system permease protein.
   
 
 0.818
SKA99714.1
Putative ABC transport system permease protein.
   
 
 0.818
SKA90802.1
Putative ABC transport system permease protein.
   
 
 0.745
SKA95739.1
Putative ABC transport system permease protein.
   
 
 0.745
SKA86196.1
Putative ABC transport system ATP-binding protein.
   
 
 0.660
SKA90796.1
Putative ABC transport system ATP-binding protein.
   
 
 0.660
SKA92378.1
Putative ABC transport system ATP-binding protein.
   
 
 0.660
SKA93414.1
Putative ABC transport system ATP-binding protein.
   
 
 0.660
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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