Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA80913.1 | SKA88926.1 | SAMN02745178_01039 | SAMN02745178_01895 | Uridine kinase. | Serine aminopeptidase, S33. | 0.805 |
SKA80913.1 | pyrF | SAMN02745178_01039 | SAMN02745178_00157 | Uridine kinase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.814 |
SKA80913.1 | pyrH | SAMN02745178_01039 | SAMN02745178_00965 | Uridine kinase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.830 |
SKA80913.1 | udk | SAMN02745178_01039 | SAMN02745178_00998 | Uridine kinase. | Uridine kinase. | 0.701 |
SKA80913.1 | upp | SAMN02745178_01039 | SAMN02745178_00445 | Uridine kinase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.953 |
SKA88926.1 | SKA80913.1 | SAMN02745178_01895 | SAMN02745178_01039 | Serine aminopeptidase, S33. | Uridine kinase. | 0.805 |
SKA88926.1 | SKA93345.1 | SAMN02745178_01895 | SAMN02745178_02364 | Serine aminopeptidase, S33. | AAA domain-containing protein. | 0.805 |
SKA88926.1 | pyrF | SAMN02745178_01895 | SAMN02745178_00157 | Serine aminopeptidase, S33. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.846 |
SKA88926.1 | pyrH | SAMN02745178_01895 | SAMN02745178_00965 | Serine aminopeptidase, S33. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.857 |
SKA88926.1 | udk | SAMN02745178_01895 | SAMN02745178_00998 | Serine aminopeptidase, S33. | Uridine kinase. | 0.805 |
SKA88926.1 | upp | SAMN02745178_01895 | SAMN02745178_00445 | Serine aminopeptidase, S33. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.846 |
SKA93345.1 | SKA88926.1 | SAMN02745178_02364 | SAMN02745178_01895 | AAA domain-containing protein. | Serine aminopeptidase, S33. | 0.805 |
SKA93345.1 | pyrF | SAMN02745178_02364 | SAMN02745178_00157 | AAA domain-containing protein. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.826 |
SKA93345.1 | pyrH | SAMN02745178_02364 | SAMN02745178_00965 | AAA domain-containing protein. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.841 |
SKA93345.1 | upp | SAMN02745178_02364 | SAMN02745178_00445 | AAA domain-containing protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.956 |
frr | pyrH | SAMN02745178_00966 | SAMN02745178_00965 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.998 |
frr | rplA | SAMN02745178_00966 | SAMN02745178_00044 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.989 |
frr | rpsB | SAMN02745178_00966 | SAMN02745178_01080 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.993 |
frr | tsf | SAMN02745178_00966 | SAMN02745178_01081 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.989 |
pyrF | SKA80913.1 | SAMN02745178_00157 | SAMN02745178_01039 | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | Uridine kinase. | 0.814 |
page 1 of 4