STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA80355.1GHKL domain-containing protein. (394 aa)    
Predicted Functional Partners:
SKA80351.1
Two component transcriptional regulator, LytTR family.
 
  
  0.893
SKA80366.1
Beta-glucosidase.
 
    0.814
SKA80115.1
Two component transcriptional regulator, LytTR family.
  
  
  0.788
SKA94994.1
Two component transcriptional regulator, LytTR family.
  
  
  0.776
SKA88775.1
Two component transcriptional regulator, LytTR family.
  
  
  0.775
SKA95021.1
Fibronectin type III-like domain-containing protein.
  
    0.768
SKA96910.1
GHKL domain-containing protein.
  
  
  0.758
SKA96653.1
Beta-glucosidase.
  
    0.751
SKA88103.1
Beta-glucosidase.
  
    0.739
SKA98577.1
GHKL domain-containing protein.
  
  
  0.734
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.