SKA80800.1 protein (Gemmiger formicilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKA80800.1

ABC-2 type transport system ATP-binding protein. (303 aa)

Predicted Functional Partners:

SKA80784.1

0.952

SKA80792.1

0.932

SKA76478.1

0.907

ftsE

0.903

SKA80818.1

0.826

SKA83349.1

0.766

SKA73659.1

0.744

SKA82859.1

0.721

SKA92378.1

0.693

SKA91547.1

0.683

Your Current Organism:

Gemmiger formicilis

NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA73659.1	SKA80800.1	SAMN02745178_00190	SAMN02745178_01026	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.	ABC-2 type transport system ATP-binding protein.	0.744
SKA76478.1	SKA80800.1	SAMN02745178_00603	SAMN02745178_01026	ABC-type multidrug transport system, ATPase component.	ABC-2 type transport system ATP-binding protein.	0.907
SKA76478.1	SKA82859.1	SAMN02745178_00603	SAMN02745178_01230	ABC-type multidrug transport system, ATPase component.	ABC-2 type transport system permease protein.	0.752
SKA76478.1	SKA83349.1	SAMN02745178_00603	SAMN02745178_01310	ABC-type multidrug transport system, ATPase component.	CAAX protease self-immunity.	0.833
SKA76478.1	SKA91547.1	SAMN02745178_00603	SAMN02745178_02152	ABC-type multidrug transport system, ATPase component.	Hypothetical protein.	0.619
SKA80784.1	SKA80792.1	SAMN02745178_01024	SAMN02745178_01025	Hypothetical protein.	Hypothetical protein.	0.985
SKA80784.1	SKA80800.1	SAMN02745178_01024	SAMN02745178_01026	Hypothetical protein.	ABC-2 type transport system ATP-binding protein.	0.952
SKA80784.1	SKA80818.1	SAMN02745178_01024	SAMN02745178_01028	Hypothetical protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.886
SKA80792.1	SKA80784.1	SAMN02745178_01025	SAMN02745178_01024	Hypothetical protein.	Hypothetical protein.	0.985
SKA80792.1	SKA80800.1	SAMN02745178_01025	SAMN02745178_01026	Hypothetical protein.	ABC-2 type transport system ATP-binding protein.	0.932
SKA80792.1	SKA80818.1	SAMN02745178_01025	SAMN02745178_01028	Hypothetical protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.887
SKA80800.1	SKA73659.1	SAMN02745178_01026	SAMN02745178_00190	ABC-2 type transport system ATP-binding protein.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.	0.744
SKA80800.1	SKA76478.1	SAMN02745178_01026	SAMN02745178_00603	ABC-2 type transport system ATP-binding protein.	ABC-type multidrug transport system, ATPase component.	0.907
SKA80800.1	SKA80784.1	SAMN02745178_01026	SAMN02745178_01024	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.952
SKA80800.1	SKA80792.1	SAMN02745178_01026	SAMN02745178_01025	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.932
SKA80800.1	SKA80818.1	SAMN02745178_01026	SAMN02745178_01028	ABC-2 type transport system ATP-binding protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.826
SKA80800.1	SKA82859.1	SAMN02745178_01026	SAMN02745178_01230	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.721
SKA80800.1	SKA83349.1	SAMN02745178_01026	SAMN02745178_01310	ABC-2 type transport system ATP-binding protein.	CAAX protease self-immunity.	0.766
SKA80800.1	SKA91547.1	SAMN02745178_01026	SAMN02745178_02152	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.683
SKA80800.1	SKA92378.1	SAMN02745178_01026	SAMN02745178_02234	ABC-2 type transport system ATP-binding protein.	Putative ABC transport system ATP-binding protein.	0.693