STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA81144.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (192 aa)    
Predicted Functional Partners:
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.834
SKA81150.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SKA81158.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.767
SKA81164.1
NitT/TauT family transport system substrate-binding protein.
  
 
  0.742
SKA81180.1
NitT/TauT family transport system ATP-binding protein.
  
 
 0.665
SKA81171.1
NitT/TauT family transport system permease protein.
  
 
  0.650
SKA92366.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.593
SKA87387.1
Nitroreductase.
 
 
 0.565
SKA72807.1
Glyoxylase I family protein.
  
 
 0.548
SKA73533.1
Acyl-CoA dehydrogenase, middle domain.
  
 
 0.538
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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