SKA82451.1 protein (Gemmiger formicilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKA82451.1

Phage DNA replication protein (predicted replicative helicase loader). (279 aa)

Predicted Functional Partners:

SKA82468.1

0.934

SKA82485.1

0.885

SKA82493.1

0.859

SKA82445.1

0.782

SKA83974.1

0.743

SKA89100.1

0.743

SKA90458.1

0.743

SKA83964.1

0.720

SKA89090.1

0.720

SKA90472.1

0.720

Your Current Organism:

Gemmiger formicilis

NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA82445.1	SKA82451.1	SAMN02745178_01159	SAMN02745178_01160	Transposon-encoded protein TnpW.	Phage DNA replication protein (predicted replicative helicase loader).	0.782
SKA82445.1	SKA82468.1	SAMN02745178_01159	SAMN02745178_01161	Transposon-encoded protein TnpW.	Replication initiator protein A (RepA) N-terminus.	0.747
SKA82445.1	SKA82485.1	SAMN02745178_01159	SAMN02745178_01163	Transposon-encoded protein TnpW.	Relaxase/Mobilisation nuclease domain-containing protein.	0.865
SKA82445.1	SKA82493.1	SAMN02745178_01159	SAMN02745178_01164	Transposon-encoded protein TnpW.	Mobilisation protein (MobC).	0.832
SKA82445.1	SKA83974.1	SAMN02745178_01159	SAMN02745178_01350	Transposon-encoded protein TnpW.	Relaxase/Mobilisation nuclease domain-containing protein.	0.711
SKA82445.1	SKA89100.1	SAMN02745178_01159	SAMN02745178_01922	Transposon-encoded protein TnpW.	Relaxase/Mobilisation nuclease domain-containing protein.	0.711
SKA82445.1	SKA90458.1	SAMN02745178_01159	SAMN02745178_02024	Transposon-encoded protein TnpW.	Relaxase/Mobilisation nuclease domain-containing protein.	0.711
SKA82451.1	SKA82445.1	SAMN02745178_01160	SAMN02745178_01159	Phage DNA replication protein (predicted replicative helicase loader).	Transposon-encoded protein TnpW.	0.782
SKA82451.1	SKA82468.1	SAMN02745178_01160	SAMN02745178_01161	Phage DNA replication protein (predicted replicative helicase loader).	Replication initiator protein A (RepA) N-terminus.	0.934
SKA82451.1	SKA82485.1	SAMN02745178_01160	SAMN02745178_01163	Phage DNA replication protein (predicted replicative helicase loader).	Relaxase/Mobilisation nuclease domain-containing protein.	0.885
SKA82451.1	SKA82493.1	SAMN02745178_01160	SAMN02745178_01164	Phage DNA replication protein (predicted replicative helicase loader).	Mobilisation protein (MobC).	0.859
SKA82451.1	SKA83964.1	SAMN02745178_01160	SAMN02745178_01348	Phage DNA replication protein (predicted replicative helicase loader).	Replication initiator protein A (RepA) N-terminus.	0.720
SKA82451.1	SKA83974.1	SAMN02745178_01160	SAMN02745178_01350	Phage DNA replication protein (predicted replicative helicase loader).	Relaxase/Mobilisation nuclease domain-containing protein.	0.743
SKA82451.1	SKA89090.1	SAMN02745178_01160	SAMN02745178_01920	Phage DNA replication protein (predicted replicative helicase loader).	Replication initiator protein A (RepA) N-terminus.	0.720
SKA82451.1	SKA89100.1	SAMN02745178_01160	SAMN02745178_01922	Phage DNA replication protein (predicted replicative helicase loader).	Relaxase/Mobilisation nuclease domain-containing protein.	0.743
SKA82451.1	SKA90458.1	SAMN02745178_01160	SAMN02745178_02024	Phage DNA replication protein (predicted replicative helicase loader).	Relaxase/Mobilisation nuclease domain-containing protein.	0.743
SKA82451.1	SKA90472.1	SAMN02745178_01160	SAMN02745178_02026	Phage DNA replication protein (predicted replicative helicase loader).	Replication initiator protein A (RepA) N-terminus.	0.720
SKA82468.1	SKA82445.1	SAMN02745178_01161	SAMN02745178_01159	Replication initiator protein A (RepA) N-terminus.	Transposon-encoded protein TnpW.	0.747
SKA82468.1	SKA82451.1	SAMN02745178_01161	SAMN02745178_01160	Replication initiator protein A (RepA) N-terminus.	Phage DNA replication protein (predicted replicative helicase loader).	0.934
SKA82468.1	SKA82485.1	SAMN02745178_01161	SAMN02745178_01163	Replication initiator protein A (RepA) N-terminus.	Relaxase/Mobilisation nuclease domain-containing protein.	0.836