STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA82852.1ABC-2 type transport system permease protein. (474 aa)    
Predicted Functional Partners:
SKA82859.1
ABC-2 type transport system permease protein.
  
 0.995
SKA82865.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.946
SKA82846.1
Protein of unknown function.
       0.800
SKA75578.1
Leucine rich repeat-containing protein.
  
     0.467
SKA82870.1
Protein of unknown function.
       0.450
SKA84313.1
Hypothetical protein.
 
     0.441
SKA75576.1
Predicted metal-dependent peptidase.
  
     0.404
SKA82840.1
beta-N-acetylhexosaminidase.
       0.404
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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