STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA84700.1Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family. (276 aa)    
Predicted Functional Partners:
SKA84692.1
Polar amino acid transport system permease protein.
 0.997
SKA84686.1
Polar amino acid transport system ATP-binding protein.
 
 0.965
SKA87772.1
Cystine transport system permease protein.
 0.879
SKA73290.1
Polar amino acid transport system permease protein.
 0.867
SKA92719.1
Hypothetical protein.
   
 0.854
SKA87373.1
Putative lysine transport system permease protein.
 
 0.838
SKA73295.1
Polar amino acid transport system ATP-binding protein.
 
 0.829
SKA87777.1
Cystine transport system ATP-binding protein.
 
 0.816
SKA73020.1
Chorismate mutase.
     
 0.796
SKA83180.1
Polar amino acid transport system permease protein.
 
 0.783
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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