STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA87124.1Protein of unknown function. (144 aa)    
Predicted Functional Partners:
SKA87130.1
Type IV secretory pathway, VirB4 component.
  
    0.813
SKA87134.1
PrgI family protein.
  
    0.813
SKA87138.1
Hypothetical protein.
       0.773
SKA87147.1
Predicted nucleotidyltransferase component of viral defense system.
       0.773
SKA87153.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
       0.773
SKA87166.1
Type IV secretion system protein VirD4.
 
     0.606
SKA87160.1
TrbC/VIRB2 family protein.
       0.554
SKA87171.1
Hypothetical protein.
       0.554
SKA87178.1
Protein of unknown function.
       0.554
SKA87185.1
Relaxase/Mobilisation nuclease domain-containing protein.
       0.554
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.