STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA87171.1Hypothetical protein. (274 aa)    
Predicted Functional Partners:
SKA87160.1
TrbC/VIRB2 family protein.
       0.773
SKA87166.1
Type IV secretion system protein VirD4.
       0.773
SKA87178.1
Protein of unknown function.
       0.773
SKA87185.1
Relaxase/Mobilisation nuclease domain-containing protein.
       0.773
SKA87124.1
Protein of unknown function.
       0.554
SKA87130.1
Type IV secretory pathway, VirB4 component.
       0.554
SKA87134.1
PrgI family protein.
       0.554
SKA87138.1
Hypothetical protein.
       0.554
SKA87147.1
Predicted nucleotidyltransferase component of viral defense system.
       0.554
SKA87153.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
       0.554
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.