STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA87209.1Protein of unknown function. (248 aa)    
Predicted Functional Partners:
SKA87222.1
Hypothetical protein.
       0.773
SKA87206.1
Hypothetical protein.
       0.580
SKA87231.1
Hypothetical protein.
       0.566
SKA94294.1
Protein of unknown function.
  
     0.468
SKA87261.1
Adenine-specific DNA methylase, N12 class.
 
    0.466
SKA94647.1
Protein of unknown function.
  
     0.462
SKA97461.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
     0.461
SKA90629.1
Protein of unknown function.
  
     0.459
SKA87238.1
Plasmid stabilization system protein ParE.
       0.450
SKA87246.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.450
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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