STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA87331.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
SKA87335.1
Hypothetical protein.
       0.773
SKA82722.1
POTRA domain-containing protein, FtsQ-type; Essential cell division protein.
  
     0.712
SKA76281.1
Large subunit ribosomal protein L30.
  
     0.655
SKA79100.1
Hypothetical protein.
  
     0.636
SKA92468.1
Protein of unknown function.
  
     0.630
SKA78914.1
Ribonuclease M5.
 
   
 0.596
SKA78655.1
Stage III sporulation protein AH.
  
     0.585
SKA87338.1
Sortase family protein.
       0.559
SKA94790.1
Hypothetical protein.
  
     0.555
SKA81362.1
Protein of unknown function.
  
    0.546
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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