STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA88997.1Hypothetical protein. (426 aa)    
Predicted Functional Partners:
SKA89010.1
lactose/L-arabinose transport system permease protein.
 
     0.800
SKA97185.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.790
SKA89004.1
Hypothetical protein.
       0.778
SKA89016.1
lactose/L-arabinose transport system permease protein.
       0.773
SKA83321.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family.
    
 0.713
SKA78151.1
Ftsk gamma domain-containing protein; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.697
SKA80017.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.697
SKA89024.1
lactose/L-arabinose transport system substrate-binding protein.
 
     0.633
SKA89030.1
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase.
 
     0.628
SKA84070.1
LuxR family transcriptional regulator, maltose regulon positive regulatory protein.
  
     0.597
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.