Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA75424.1 | SKA87858.1 | SAMN02745178_00425 | SAMN02745178_01777 | DNA polymerase I. | ATP-dependent DNA helicase RecQ. | 0.993 |
SKA75424.1 | SKA90642.1 | SAMN02745178_00425 | SAMN02745178_02049 | DNA polymerase I. | DNA topoisomerase-3. | 0.740 |
SKA75424.1 | SKA90743.1 | SAMN02745178_00425 | SAMN02745178_02051 | DNA polymerase I. | Hypothetical protein. | 0.965 |
SKA75424.1 | SKA92445.1 | SAMN02745178_00425 | SAMN02745178_02243 | DNA polymerase I. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.999 |
SKA75424.1 | mutL | SAMN02745178_00425 | SAMN02745178_00893 | DNA polymerase I. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.997 |
SKA75424.1 | topA | SAMN02745178_00425 | SAMN02745178_00357 | DNA polymerase I. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.929 |
SKA87858.1 | SKA75424.1 | SAMN02745178_01777 | SAMN02745178_00425 | ATP-dependent DNA helicase RecQ. | DNA polymerase I. | 0.993 |
SKA87858.1 | SKA90642.1 | SAMN02745178_01777 | SAMN02745178_02049 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase-3. | 0.992 |
SKA87858.1 | SKA90743.1 | SAMN02745178_01777 | SAMN02745178_02051 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.688 |
SKA87858.1 | SKA92445.1 | SAMN02745178_01777 | SAMN02745178_02243 | ATP-dependent DNA helicase RecQ. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.837 |
SKA87858.1 | mutL | SAMN02745178_01777 | SAMN02745178_00893 | ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.921 |
SKA87858.1 | topA | SAMN02745178_01777 | SAMN02745178_00357 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.992 |
SKA90629.1 | SKA90636.1 | SAMN02745178_02047 | SAMN02745178_02048 | Protein of unknown function. | Protein of unknown function. | 0.949 |
SKA90629.1 | SKA90642.1 | SAMN02745178_02047 | SAMN02745178_02049 | Protein of unknown function. | DNA topoisomerase-3. | 0.906 |
SKA90629.1 | SKA90737.1 | SAMN02745178_02047 | SAMN02745178_02050 | Protein of unknown function. | Protein of unknown function. | 0.886 |
SKA90629.1 | SKA90743.1 | SAMN02745178_02047 | SAMN02745178_02051 | Protein of unknown function. | Hypothetical protein. | 0.539 |
SKA90629.1 | SKA90749.1 | SAMN02745178_02047 | SAMN02745178_02052 | Protein of unknown function. | Putative tranposon-transfer assisting protein. | 0.533 |
SKA90636.1 | SKA90629.1 | SAMN02745178_02048 | SAMN02745178_02047 | Protein of unknown function. | Protein of unknown function. | 0.949 |
SKA90636.1 | SKA90642.1 | SAMN02745178_02048 | SAMN02745178_02049 | Protein of unknown function. | DNA topoisomerase-3. | 0.922 |
SKA90636.1 | SKA90737.1 | SAMN02745178_02048 | SAMN02745178_02050 | Protein of unknown function. | Protein of unknown function. | 0.901 |
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