STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA91381.1MarR family protein. (156 aa)    
Predicted Functional Partners:
SKA96564.1
PTS system, D-glucosamine-specific IIC component.
   
 
 0.855
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.777
SKA92742.1
PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
     
 0.663
SKA96827.1
PTS system IIB component, Glc family /PTS system IIC component, Glc family.
     
 0.663
SKA93374.1
Ribosomal protein S18 acetylase RimI.
  
     0.500
SKA93635.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.483
SKA91389.1
Cation-transporting ATPase E.
  
    0.404
SKA80698.1
Hypothetical protein.
  
   
 0.402
SKA80706.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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