STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA92133.1Trk system potassium uptake protein TrkH. (445 aa)    
Predicted Functional Partners:
SKA92129.1
Trk system potassium uptake protein TrkA.
 
 0.988
SKA85785.1
Trk system potassium uptake protein TrkA.
 
 
 0.956
SKA94810.1
Trk system potassium uptake protein TrkA.
  
 
 0.790
SKA92366.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.608
SKA92123.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
     
 0.469
SKA92117.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
       0.425
SKA92136.1
Hypothetical protein.
       0.402
SKA92139.1
Hypothetical protein.
       0.402
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.