STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA92795.1Helix-turn-helix. (232 aa)    
Predicted Functional Partners:
SKA76281.1
Large subunit ribosomal protein L30.
  
     0.766
SKA79100.1
Hypothetical protein.
  
    0.755
SKA94790.1
Hypothetical protein.
  
     0.746
SKA78655.1
Stage III sporulation protein AH.
  
     0.731
SKA81362.1
Protein of unknown function.
  
     0.721
SKA92468.1
Protein of unknown function.
  
     0.719
SKA78914.1
Ribonuclease M5.
  
     0.717
SKA75440.1
Uncharacterized membrane protein YfhO.
  
     0.711
SKA82722.1
POTRA domain-containing protein, FtsQ-type; Essential cell division protein.
  
     0.709
SKA80840.1
YbbR domain-containing protein.
  
     0.687
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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