STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93058.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (228 aa)    
Predicted Functional Partners:
SKA93065.1
Signal transduction histidine kinase.
  0.971
SKA92719.1
Hypothetical protein.
  
 0.960
SKA89747.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.945
SKA93619.1
Signal transduction histidine kinase.
 0.904
SKA85646.1
Signal transduction histidine kinase.
 
0.890
SKA86854.1
Signal transduction histidine kinase.
 0.874
SKA95531.1
Signal transduction histidine kinase.
  
  0.869
SKA89512.1
Signal transduction histidine kinase.
 
  0.861
SKA95221.1
Signal transduction histidine kinase.
 
  0.858
SKA84757.1
Signal transduction histidine kinase.
  
  0.855
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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