STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93460.1Sugar (pentulose or hexulose) kinase. (521 aa)    
Predicted Functional Partners:
SKA93454.1
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.820
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.713
SKA93433.1
L-fucose isomerase.
 
 
 0.711
SKA86997.1
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.696
SKA72985.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.640
SKA87763.1
L-rhamnose mutarotase.
  
  
 0.560
SKA98619.1
L-rhamnose mutarotase.
  
  
 0.560
SKA93438.1
Protein of unknown function.
  
  
 0.526
SKA87715.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.493
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
   
 0.449
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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