STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93936.1Transposon-encoded protein TnpV. (113 aa)    
Predicted Functional Partners:
SKA90533.1
DeoR-like helix-turn-helix domain-containing protein.
  
     0.679
SKA93933.1
Adenine-specific DNA methylase, N12 class.
       0.637
SKA90521.1
Helix-turn-helix domain-containing protein.
  
     0.586
SKA90559.1
CHC2 zinc finger.
  
     0.544
SKA90552.1
Plasmid mobilization system relaxase.
  
     0.540
SKA93931.1
Hypothetical protein.
       0.484
SKA87037.1
Helix-turn-helix domain-containing protein.
  
     0.465
SKA87209.1
Protein of unknown function.
  
     0.417
SKA82478.1
Cysteine-rich VLP.
  
     0.414
SKA83969.1
Cysteine-rich VLP.
  
     0.414
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.