STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA94197.1Type IV secretory pathway, VirD4 components. (934 aa)    
Predicted Functional Partners:
SKA94131.1
Type IV secretory system Conjugative DNA transfer.
    0.881
SKA94191.1
Transposon-encoded protein TnpV.
 
     0.828
SKA94161.1
Plasmid mobilization system relaxase.
 
     0.790
SKA94147.1
DNA primase (bacterial type).
 
     0.612
SKA94202.1
Protein of unknown function.
       0.524
SKA94215.1
Hypothetical protein.
       0.524
SKA94184.1
Hypothetical protein.
       0.487
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.