STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA94510.1Hypothetical protein. (778 aa)    
Predicted Functional Partners:
SKA94517.1
PrgI family protein.
 
     0.943
SKA94556.1
Type IV secretion system protein VirD4.
  
    0.778
SKA94131.1
Type IV secretory system Conjugative DNA transfer.
  
    0.777
SKA96248.1
Hypothetical protein.
  
     0.773
SKA87138.1
Hypothetical protein.
  
     0.772
SKA94118.1
Hypothetical protein.
  
     0.772
SKA94541.1
Hypothetical protein.
  
     0.772
SKA87166.1
Type IV secretion system protein VirD4.
  
    0.771
SKA94110.1
PrgI family protein.
 
     0.770
SKA94588.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.764
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.