STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA94780.1Looped-hinge helix DNA binding domain-containing protein, AbrB family. (139 aa)    
Predicted Functional Partners:
SKA94773.1
Acyltransferase family protein.
 
     0.831
SKA86847.1
Hypothetical protein.
   
 
 0.817
SKA73067.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.631
SKA82718.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
   
 0.582
SKA79315.1
Helix-turn-helix.
  
   
 0.502
SKA77832.1
mRNA interferase RelE/StbE.
     
 0.469
nnrD
NAD(P)H-hydrate epimerase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
    0.446
SKA78828.1
Hypothetical protein.
  
     0.429
SKA94758.1
Glutamate synthase (ferredoxin).
       0.404
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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