STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA94795.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (272 aa)    
Predicted Functional Partners:
SKA94790.1
Hypothetical protein.
       0.639
SKA94784.1
Glycosidase.
     
 0.609
SKA94800.1
Hypothetical protein.
       0.537
SKA75988.1
LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.
  
  
 0.483
SKA97192.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.448
SKA83321.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family.
  
   
 0.441
SKA73480.1
Glycosyltransferase, GT2 family.
 
 
 0.416
SKA96405.1
Lysophospholipase L1.
    
 0.404
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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