STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA95399.1Protein of unknown function. (215 aa)    
Predicted Functional Partners:
SKA95395.1
Protein of unknown function.
 
     0.946
SKA95391.1
NlpC/P60 family protein.
 
     0.915
SKA95382.1
PrgI family protein.
 
     0.867
SKA95386.1
Type IV secretory pathway, VirB4 component.
 
     0.845
SKA95411.1
Mobilisation protein (MobC).
 
     0.835
SKA95349.1
Hypothetical protein.
 
     0.825
SKA95343.1
Protein of unknown function.
 
     0.811
SKA95418.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.808
SKA95340.1
Antirestriction protein (ArdA).
 
     0.800
SKA95352.1
Stage V sporulation protein G; Belongs to the SpoVG family.
 
     0.778
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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