STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA96405.1Lysophospholipase L1. (1050 aa)    
Predicted Functional Partners:
SKA96400.1
Putative aldouronate transport system substrate-binding protein.
 
    0.903
SKA96459.1
Polysaccharide deacetylase.
 
  
 0.892
SKA74324.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
 0.809
SKA83155.1
Pectinesterase.
  
  
 0.781
SKA96390.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
    0.755
SKA97969.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.752
SKA98624.1
Unsaturated rhamnogalacturonyl hydrolase.
 
  
 0.741
SKA83135.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
 0.733
SKA98272.1
Hypothetical protein.
 
 0.721
SKA83107.1
Oligogalacturonide transport system substrate-binding protein.
  
    0.712
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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