STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA96821.1Transcriptional regulator, RpiR family. (261 aa)    
Predicted Functional Partners:
SKA96564.1
PTS system, D-glucosamine-specific IIC component.
 
 
 0.944
SKA96827.1
PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
 
 0.897
SKA92742.1
PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
 
 
 0.884
SKA92366.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.853
SKA89870.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.840
SKA97174.1
Mannose-6-phosphate isomerase.
  
 
 0.840
SKA73073.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.668
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.511
SKA88655.1
Fructoselysine-6-P-deglycase FrlB with duplicated sugar isomerase (SIS) domain.
  
  
  0.478
SKA81562.1
Putative hydrolase of the HAD superfamily.
 
  
  0.458
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.