STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA97796.1ABC-type multidrug transport system, ATPase component. (261 aa)    
Predicted Functional Partners:
ecfA-2
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.929
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
   
 
0.919
SKA98756.1
Putative ABC transport system ATP-binding protein.
 
    
0.915
SKA81322.1
Branched-chain amino acid transport system ATP-binding protein.
 
   
 
0.906
SKA73295.1
Polar amino acid transport system ATP-binding protein.
 
  
 
0.894
SKA97468.1
Putative ABC transport system ATP-binding protein.
 
    
0.858
ftsE
Cell division transport system ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
    
0.830
SKA91547.1
Hypothetical protein.
 
  0.827
SKA82859.1
ABC-2 type transport system permease protein.
 
 0.802
SKA97802.1
Hypothetical protein.
       0.773
Your Current Organism:
Gemmiger formicilis
NCBI taxonomy Id: 745368
Other names: ATCC 27749, G. formicilis
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