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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB49829.1D-Ala-D-Ala carboxypeptidase, Metallo peptidase, MEROPS family M15B; Alternative locus ID: P9312_08211. (237 aa)    
Predicted Functional Partners:
ABB49487.1
Putative penicillin binding protein; Alternative locus ID: P9312_04511.
     
 0.903
ABB49828.1
Geranylgeranyl reductase; Alternative locus ID: P9312_08201.
       0.656
ABB49830.1
GTP-binding protein TypA; Alternative locus ID: P9312_08221.
       0.616
ABB49831.1
Conserved hypothetical protein; Alternative locus ID: P9312_08231.
       0.549
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
   
 0.492
Your Current Organism:
Prochlorococcus marinus MIT9312
NCBI taxonomy Id: 74546
Other names: P. marinus str. MIT 9312, Prochlorococcus marinus str. MIT 9312, Prochlorococcus sp. MIT 9312, Prochlorococcus sp. MIT9312
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.