STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB50127.1Cytochrome cM; Alternative locus ID: P9312_11531. (128 aa)    
Predicted Functional Partners:
trmJ
RNA methyltransferase TrmH, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
 
     0.851
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.774
ABB49503.1
Transcriptional regulator AbrB; Alternative locus ID: P9312_04671.
  
     0.774
ABB49634.1
Transcriptional regulator AbrB; Alternative locus ID: P9312_05981.
  
     0.774
ABB49906.1
Conserved hypothetical protein; Alternative locus ID: P9312_09031.
  
     0.774
ABB50179.1
Conserved hypothetical protein; Alternative locus ID: P9312_12061.
  
     0.774
ABB49189.1
Conserved hypothetical protein; Alternative locus ID: P9312_01341; Belongs to the UPF0367 family.
  
     0.773
ABB49331.1
Conserved hypothetical protein; Alternative locus ID: P9312_02781.
  
     0.773
ABB50633.1
PBS lyase HEAT-like repeat; Alternative locus ID: P9312_17221.
  
     0.773
ABB49204.1
Putative Ycf34; Alternative locus ID: P9312_01491.
  
     0.772
Your Current Organism:
Prochlorococcus marinus MIT9312
NCBI taxonomy Id: 74546
Other names: P. marinus str. MIT 9312, Prochlorococcus marinus str. MIT 9312, Prochlorococcus sp. MIT 9312, Prochlorococcus sp. MIT9312
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