STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THRCLA_11786ATP-dependent RNA helicase DBP2. (66 aa)    
Predicted Functional Partners:
THRCLA_07817
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.877
THRCLA_04893
rRNA-processing protein EBP2.
   
 0.836
THRCLA_10259
Guanine nucleotide-binding protein.
  
  0.806
THRCLA_09730
Guanine nucleotide-binding protein-like 3.
  
  0.806
THRCLA_02329
Splicing factor 3B subunit 1.
   
 0.802
THRCLA_23381
RRM domain-containing protein.
    
 0.799
THRCLA_03604
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.787
THRCLA_04672
Nucleolar protein NOP5.
  
 
 0.784
THRCLA_01154
RNA binding protein.
    
 0.784
THRCLA_04916
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.783
Your Current Organism:
Thraustotheca clavata
NCBI taxonomy Id: 74557
Other names: T. clavata
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