STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THRCLA_05163Ribosome production factor 1. (319 aa)    
Predicted Functional Partners:
THRCLA_11153
Drug/Metabolite Transporter (DMT) Superfamily.
   
 
 0.997
THRCLA_09958
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 
 0.996
THRCLA_02071
Brix domain-containing protein.
   
 
 0.996
THRCLA_04893
rRNA-processing protein EBP2.
   
 
 0.995
THRCLA_10148
Ribosomal RNA processing protein 1.
   
 
 0.994
THRCLA_00978
WD_REPEATS_REGION domain-containing protein.
   
 
 0.994
THRCLA_07817
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.992
THRCLA_01274
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.992
THRCLA_04480
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.990
THRCLA_07963
Nucleolar complex protein.
   
 
 0.988
Your Current Organism:
Thraustotheca clavata
NCBI taxonomy Id: 74557
Other names: T. clavata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.