STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THRCLA_04121Threonyl-tRNA synthetase. (800 aa)    
Predicted Functional Partners:
THRCLA_08041
50S ribosomal protein L15.
   
 
 0.882
THRCLA_10090
Threonyl-tRNA synthetase.
  
  
 
0.868
THRCLA_05268
tRNA-binding domain-containing protein.
  
 
 0.862
THRCLA_20478
50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.847
THRCLA_04583
50S ribosomal protein L3-2; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.834
THRCLA_08608
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.833
THRCLA_09957
40S ribosomal protein S14.
   
 
 0.812
THRCLA_21911
RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.810
THRCLA_01691
60S ribosomal protein L10a-1.
   
 
 0.808
THRCLA_21775
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.795
Your Current Organism:
Thraustotheca clavata
NCBI taxonomy Id: 74557
Other names: T. clavata
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