THRCLA_03655 protein (Thraustotheca clavata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THRCLA_03655

Glucanase; Belongs to the glycosyl hydrolase family 6. (1308 aa)

Predicted Functional Partners:

THRCLA_05356

0.719

THRCLA_01269

0.719

THRCLA_06533

0.677

KATNAL2

0.595

THRCLA_05081

0.495

THRCLA_20296

0.489

THRCLA_08754

0.477

THRCLA_07987

0.476

THRCLA_07416

0.475

THRCLA_06133

0.475

Your Current Organism:

Thraustotheca clavata

NCBI taxonomy Id: 74557
Other names: T. clavata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	THRCLA_03655	A0A1V9Z0D2	A0A1W0A1E0	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Glucanase; Belongs to the glycosyl hydrolase family 6.	0.595
KATNAL2	THRCLA_08754	A0A1V9Z0D2	A0A1V9Z2W6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Citrate synthase; Belongs to the citrate synthase family.	0.709
THRCLA_01269	THRCLA_03655	A0A1W0A8S0	A0A1W0A1E0	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Glucanase; Belongs to the glycosyl hydrolase family 6.	0.719
THRCLA_01269	THRCLA_05356	A0A1W0A8S0	A0A1V9ZW45	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Nitrate reductase.	0.995
THRCLA_01269	THRCLA_06133	A0A1W0A8S0	A0A1V9ZQB5	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Acetolactate synthase.	0.594
THRCLA_01269	THRCLA_06533	A0A1W0A8S0	A0A1V9ZNQ2	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Sulfite oxidase.	0.919
THRCLA_01269	THRCLA_07416	A0A1W0A8S0	A0A1V9ZDD6	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.	0.571
THRCLA_01269	THRCLA_08754	A0A1W0A8S0	A0A1V9Z2W6	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Citrate synthase; Belongs to the citrate synthase family.	0.634
THRCLA_01269	THRCLA_20296	A0A1W0A8S0	A0A1W0A955	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.439
THRCLA_03655	KATNAL2	A0A1W0A1E0	A0A1V9Z0D2	Glucanase; Belongs to the glycosyl hydrolase family 6.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.595
THRCLA_03655	THRCLA_01269	A0A1W0A1E0	A0A1W0A8S0	Glucanase; Belongs to the glycosyl hydrolase family 6.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.719
THRCLA_03655	THRCLA_05081	A0A1W0A1E0	A0A1V9ZX34	Glucanase; Belongs to the glycosyl hydrolase family 6.	Acyl-CoA dehydrogenase.	0.495
THRCLA_03655	THRCLA_05356	A0A1W0A1E0	A0A1V9ZW45	Glucanase; Belongs to the glycosyl hydrolase family 6.	Nitrate reductase.	0.719
THRCLA_03655	THRCLA_06133	A0A1W0A1E0	A0A1V9ZQB5	Glucanase; Belongs to the glycosyl hydrolase family 6.	Acetolactate synthase.	0.475
THRCLA_03655	THRCLA_06533	A0A1W0A1E0	A0A1V9ZNQ2	Glucanase; Belongs to the glycosyl hydrolase family 6.	Sulfite oxidase.	0.677
THRCLA_03655	THRCLA_07416	A0A1W0A1E0	A0A1V9ZDD6	Glucanase; Belongs to the glycosyl hydrolase family 6.	Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.	0.475
THRCLA_03655	THRCLA_07987	A0A1W0A1E0	A0A1V9ZBB2	Glucanase; Belongs to the glycosyl hydrolase family 6.	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial.	0.476
THRCLA_03655	THRCLA_08754	A0A1W0A1E0	A0A1V9Z2W6	Glucanase; Belongs to the glycosyl hydrolase family 6.	Citrate synthase; Belongs to the citrate synthase family.	0.477
THRCLA_03655	THRCLA_20296	A0A1W0A1E0	A0A1W0A955	Glucanase; Belongs to the glycosyl hydrolase family 6.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.489
THRCLA_05081	THRCLA_03655	A0A1V9ZX34	A0A1W0A1E0	Acyl-CoA dehydrogenase.	Glucanase; Belongs to the glycosyl hydrolase family 6.	0.495