Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uspAUspA. (171 aa)    
Predicted Functional Partners:
AFD23938.1
Cleavage and polyadenylation specificity factor-related protein.
  
    0.742
AFD23936.1
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
  
 0.712
AFD23935.1
LmbE-like protein.
       0.490
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.480
yvyD
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.436
Your Current Organism:
Deinococcus gobiensis
NCBI taxonomy Id: 745776
Other names: D. gobiensis I-0, Deinococcus gobiensis I-0, Deinococcus gobiensis str. I-0, Deinococcus gobiensis strain I-0, Deinococcus sp. I-0
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