Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfhMAlpha/beta hydrolase fold protein. (271 aa)    
Predicted Functional Partners:
ade
Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
       0.717
AFD25506.1
Hydrolase, alpha/beta hydrolase fold family.
  
     0.662
AFD25646.1
Chloride peroxidase, putative.
  
     0.636
AFD24292.1
Ferredoxin.
  
  
 0.584
cyp-2
Cytochrome P450.
 
   0.547
AFD26628.1
Calcineurin family phosphoesterase.
    
  0.482
AFD25988.1
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.476
AFD24301.1
AMP-dependent synthetase and ligase.
 
 
 0.465
cyp-4
Cytochrome P450.
 
   0.448
AFD23933.1
Oxidoreductase, short-chain dehydrogenase/reductase family.
  
  0.447
Your Current Organism:
Deinococcus gobiensis
NCBI taxonomy Id: 745776
Other names: D. gobiensis I-0, Deinococcus gobiensis I-0, Deinococcus gobiensis str. I-0, Deinococcus gobiensis strain I-0, Deinococcus sp. I-0
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