STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmFCytochrome c assembly protein. (660 aa)    
Predicted Functional Partners:
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.960
AFD25940.1
Cytochrome c assembly protein.
 
  
 0.945
nrfF
Formate-dependent nitrite reductase complex, nrfF subunit; Possible subunit of a heme lyase.
 
  
 0.927
tlp
Redoxin.
 
     0.861
AFD25564.1
Cytochrome c-type biogenesis protein CcmB.
 
  
 0.840
AFD25121.1
Peptidase C39.
  
 
 0.698
AFD26468.1
Thioredoxin.
  
  
 0.584
AFD25946.1
Cytochrome oxidase family protein containing TPR repeats.
     
 0.564
AFD25941.1
Hypothetical protein.
       0.522
Your Current Organism:
Deinococcus gobiensis
NCBI taxonomy Id: 745776
Other names: D. gobiensis I-0, Deinococcus gobiensis I-0, Deinococcus gobiensis str. I-0, Deinococcus gobiensis strain I-0, Deinococcus sp. I-0
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.