STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfFFormate-dependent nitrite reductase complex, nrfF subunit; Possible subunit of a heme lyase. (111 aa)    
Predicted Functional Partners:
ccmF
Cytochrome c assembly protein.
 
  
 0.939
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
  
 0.930
AFD25940.1
Cytochrome c assembly protein.
 
   
 0.891
AFD25946.1
Cytochrome oxidase family protein containing TPR repeats.
     
 0.770
tlp
Redoxin.
 
     0.756
AFD25121.1
Peptidase C39.
  
  
 0.551
AFD25947.1
Hypothetical protein.
       0.493
ctaC
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
   
 0.447
AFD25564.1
Cytochrome c-type biogenesis protein CcmB.
 
   
 0.435
Your Current Organism:
Deinococcus gobiensis
NCBI taxonomy Id: 745776
Other names: D. gobiensis I-0, Deinococcus gobiensis I-0, Deinococcus gobiensis str. I-0, Deinococcus gobiensis strain I-0, Deinococcus sp. I-0
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.