STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN17958.1L-lysine 6-monooxygenase (NADPH-requiring). (385 aa)    
Predicted Functional Partners:
SDN17990.1
GTPase, G3E family.
 
   
 0.862
SDN17925.1
Zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.710
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.598
cysI
Sulfite reductase (NADPH) hemoprotein beta-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
  0.589
SDO38431.1
Hypothetical protein.
  
     0.548
SDN34908.1
C-3',4' desaturase CrtD.
  
     0.499
SDN39367.1
O-methyltransferase.
  
     0.488
SDN18018.1
Hypothetical protein.
       0.474
SDN99498.1
Hypothetical protein.
  
     0.413
Your Current Organism:
Bacillus daliensis
NCBI taxonomy Id: 745820
Other names: B. daliensis, Bacillus daliensis Zhai et al. 2012, Bacillus sp. DLS13, CGMCC 1.10369, JCM 17097, NBRC 107572, strain DLS13
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